Package 'RcmdrPlugin.KMggplot2' reference manual

Title:	R Commander Plug-in for Data Visualization with 'ggplot2'
Description:	A GUI front-end for 'ggplot2' supports Kaplan-Meier plot, histogram, Q-Q plot, box plot, errorbar plot, scatter plot, line chart, pie chart, bar chart, contour plot, and distribution plot.
Authors:	Kengo Nagashima [aut, cre]
Maintainer:	Kengo Nagashima <[email protected]>
License:	GPL-2
Version:	0.2-7
Built:	2025-03-26 05:28:45 UTC
Source:	https://github.com/nshi-stat/rcmdrplugin.kmggplot2

R Commander Plug-in for Data Visualization with 'ggplot2'

Description

A GUI front-end for 'ggplot2' supports Kaplan-Meier plot, histogram, Q-Q plot, box plot, errorbar plot, scatter plot, line chart, pie chart, bar chart, contour plot, and distribution plot.

Author(s)

Maintainer: Kengo Nagashima [email protected] (ORCID)

The `back` Method for `gparts_base` Class

Description

back method places GUI grids for R-Commander windows.

Usage

## S4 method for signature 'gparts_base'
back(perline = 3)
## S4 method for signature 'gparts_base'
back(perline = 3)

Arguments

perline

Integer; controls the number of per-line to GUI grids.

Check Boxes Subclass

Description

checkboxes class is a subclass for GUI check box frame.

Details

This class is a subclass which make GUI check box frame.

Fields

frame:: tkwin class object; parent of widget window.
length:: Integer; number of grids.
back_list:: List of tkwin class object; list of grids.
value:: List of tclVar class object; values of the check box frame.
cbcheckboxes:: tkwin class object; the check box frame.

Contains

gparts_base

Methods

back(perline = 3):: back method for gparts_base class.
front(top, initValues, labels, title = "", right.buttons = FALSE):: front method for checkboxes subclass.

Check Errors

Description

checkError method checks errors.

Usage

## S4 method for signature 'plot_base'
checkError(parms)
## S4 method for signature 'plot_base'
checkError(parms)

Arguments

parms

List of objects; graphics settings parameters.

Value

errorCode: Boolean; the error code.

Check Themes

Description

checkTheme method checks a theme index.

Usage

## S4 method for signature 'plot_base'
checkTheme(index)
## S4 method for signature 'plot_base'
checkTheme(index)

Arguments

index

Character; a theme index.

Value

theme: Character; the theme name.

Check Variable Length

Description

checkVariable method checks a variable length.

Usage

## S4 method for signature 'plot_base'
checkVariable(var)
## S4 method for signature 'plot_base'
checkVariable(var)

Arguments

var

Vector of Character; variable names.

Value

var: Character; the fixed variable name.

An Wrapper Function for Command Execution

Description

commandDoIt method gets the plot error message.

Usage

## S4 method for signature 'plot_base'
commandDoIt(command, log)
## S4 method for signature 'plot_base'
commandDoIt(command, log)

Arguments

`command`	String; command codes.
`log`	Boolean; use `logger`.

A Dummy Data for Contour Plots

Description

A Dummy Data for Contour Plots

Format

A data frame with 10000 observations on the following 3 variables.

x: a x-axis variable
y: a y-axis variable
z: density

Examples

# This data is generated by the code below:
# set.seed(5435678)
# dataContour <- data.frame(
#   x = (zx <- (rep(1:100, 100) - 5) / 2),
#   y = (zy <- (rep(1:100, each=100) - 5) / 2),
#   z = (z  <- zx*zy)
# )
# save(dataContour, file = "dataContour.RData")
# try(data(dataContour, package = "RcmdrPlugin.KMggplot2"))
# This data is generated by the code below:
# set.seed(5435678)
# dataContour <- data.frame(
#   x = (zx <- (rep(1:100, 100) - 5) / 2),
#   y = (zy <- (rep(1:100, each=100) - 5) / 2),
#   z = (z  <- zx*zy)
# )
# save(dataContour, file = "dataContour.RData")
# try(data(dataContour, package = "RcmdrPlugin.KMggplot2"))

A Dummy Data for Survival Analysis

Description

A Dummy Data for Survival Analysis

Format

A data frame with 200 observations on the following 8 variables.

time: time from entry (months)
age: age
height: height
weight: weight
event: event variable (0: censor, 1: event)
trt: treatment group (has three groups "Group-A", "Group-B", and "Group-C")
marker: a biomarker level (has two groups "High", and "Low")
sex: sex

Examples

# This data is generated by the code below:
# set.seed(5435678)
# age <- round(rnorm(200, 65, 10))
# height <- rep(c(170, 160), each = 50) + rnorm(200, 0, 6)
# weight <- rep(c(50, 45.5), each = 50) + 0.91 * (height - 152.4) + rnorm(200, 0, 7)
# event <- sample(c(0, 1), 200, rep = TRUE, prob = c(0.1, 0.9))
# trt <- factor(sample(c("Group-A", "Group-B", "Group-C"), 200, rep = TRUE))
# marker <- factor(sample(c("High", "Low"), 200, rep = TRUE, prob = c(0.3, 0.7)))
# sex <- factor(rep(c("M", "F"), each = 50))
# mu <- 10 + 0.1 * (age - 65) + as.numeric(sex) + as.numeric(marker) + 5 * (as.numeric(trt) - 2)
# time <- rgamma(200, mu, 1)
# time[time >= 20] <- 20
# event[time == 20] <- 0
# dataKm <- data.frame(time, age, height, weight, event, trt, marker, sex)
# save(dataKm, file = "dataKm.RData")
# try(data(dataKm, package = "RcmdrPlugin.KMggplot2"))
# This data is generated by the code below:
# set.seed(5435678)
# age <- round(rnorm(200, 65, 10))
# height <- rep(c(170, 160), each = 50) + rnorm(200, 0, 6)
# weight <- rep(c(50, 45.5), each = 50) + 0.91 * (height - 152.4) + rnorm(200, 0, 7)
# event <- sample(c(0, 1), 200, rep = TRUE, prob = c(0.1, 0.9))
# trt <- factor(sample(c("Group-A", "Group-B", "Group-C"), 200, rep = TRUE))
# marker <- factor(sample(c("High", "Low"), 200, rep = TRUE, prob = c(0.3, 0.7)))
# sex <- factor(rep(c("M", "F"), each = 50))
# mu <- 10 + 0.1 * (age - 65) + as.numeric(sex) + as.numeric(marker) + 5 * (as.numeric(trt) - 2)
# time <- rgamma(200, mu, 1)
# time[time >= 20] <- 20
# event[time == 20] <- 0
# dataKm <- data.frame(time, age, height, weight, event, trt, marker, sex)
# save(dataKm, file = "dataKm.RData")
# try(data(dataKm, package = "RcmdrPlugin.KMggplot2"))

A Dummy Data for Line Charts

Description

A Dummy Data for Line Charts

Format

A data frame with 144 observations on the following 5 variables.

date: date
group: a measurement group (has three groups "T", "H", and "L")
marker: a biomarker level (has two groups "High", and "Low")
sex: sex
y: a measurement variable

Examples

# This data is generated by the code below:
# set.seed(5435678)
# date <- rep(seq(Sys.Date(), len = 12, by = "1 month"), each = 12)
# group <- rep(c("T", "H", "L"), 12, each = 4)
# marker <- factor(rep(c("High", "Low"), 36, each = 2))
# sex <- factor(rep(c("M", "F"), 72))
# mu <- rep(c(200, 50, 150), 12, each = 4) + 10 * as.numeric(sex) + 30 * as.numeric(marker)
# y <- rnorm(144, mu, 25)
# dataLine <- data.frame(date, group, marker, sex, y)
# save(dataLine, file = "dataLine.RData")
# try(data(dataLine, package = "RcmdrPlugin.KMggplot2"))
# This data is generated by the code below:
# set.seed(5435678)
# date <- rep(seq(Sys.Date(), len = 12, by = "1 month"), each = 12)
# group <- rep(c("T", "H", "L"), 12, each = 4)
# marker <- factor(rep(c("High", "Low"), 36, each = 2))
# sex <- factor(rep(c("M", "F"), 72))
# mu <- rep(c(200, 50, 150), 12, each = 4) + 10 * as.numeric(sex) + 30 * as.numeric(marker)
# y <- rnorm(144, mu, 25)
# dataLine <- data.frame(date, group, marker, sex, y)
# save(dataLine, file = "dataLine.RData")
# try(data(dataLine, package = "RcmdrPlugin.KMggplot2"))

Factorize Subclass

Description

factorize class is a subclass for factorizing numeric variables.

Details

This class is a subclass which show dialog boxes of a factorizer for graphics editing.

Fields

top:: tkwin class object; parent of widget window.
alternateFrame:: tkwin class object; a special frame for some GUI parts.
vbbox1:: variableboxes class object; the frame to select variables.
rbbox1:: radioboxes class object; the frame to set options.

Contains

NULL

Methods

plotWindow():: Create the window that make plots.
savePlot(plot):: Save the plot.
registRmlist(object):: Register deletable temporary objects.
removeRmlist():: Remove registered temporary objects.
setFront():: Set front parts of frames.
setBack():: Set back parts of frames.
getWindowTitle():: Get the title of the window.
getHelp():: Get the title of the help document.
getParms():: Get graphics settings parameters.
checkTheme(index):: Check themes.
checkVariable(var):: Check a variable length.
checkError(parms):: Check errors.
setDataframe(parms):: Set data frames.
getGgplot(parms):: Get ggplot.
getGeom(parms):: Get geom.
getScale(parms):: Get scale.
getCoord(parms):: Get coord.
getFacet(parms):: Get facet.
getXlab(parms):: Get xlab.
getYlab(parms):: Get ylab.
getZlab(parms):: Get zlab.
getMain(parms):: Get the main label.
getTheme(parms):: Get theme.
getOpts(parms):: Get other opts.
getPlot(parms):: Get the plot object.
getMessage():: Get the plot error message.
commandDoIt(command):: An wrapper function for command execution.

The `front` Method for `checkboxes` Subclass

Description

The front Method for checkboxes Subclass

Usage

## S4 method for signature 'checkboxes'
front(top, initValues, labels, title = "", right.buttons = FALSE)
## S4 method for signature 'checkboxes'
front(top, initValues, labels, title = "", right.buttons = FALSE)

Arguments

`top`	`tkwin` class object; top of widget window.
`initValues`	List of integer; initialization values of check boxes.
`labels`	List of character; values of check boxes labels.
`title`	Character; the title of the check box frame.
`right.buttons`	Boolean; whether check boxes are right aligned or not.

The `front` Method for `radioboxes` Subclass

Description

The front Method for radioboxes Subclass

Usage

## S4 method for signature 'radioboxes'
front(top, labels, title = "", initValue = 1, right.buttons = FALSE)
## S4 method for signature 'radioboxes'
front(top, labels, title = "", initValue = 1, right.buttons = FALSE)

Arguments

`top`	`tkwin` class object; top of widget window.
`labels`	List of character; values of radio boxes labels.
`title`	Character; the title of the radio box frame.
`initValue`	Integer; the initialization value of the radio box frame.
`right.buttons`	Boolean; whether radio boxes are right aligned or not.

The `front` Method for `textfield` Subclass

Description

The front Method for textfield Subclass

Usage

## S4 method for signature 'textfield'
front(top, initialValue, boxwidth, title)
## S4 method for signature 'textfield'
front(top, initialValue, boxwidth, title)

Arguments

`top`	`tkwin` class object; top of widget window.
`initialValue`	Character; initialization values of the text field frame.
`boxwidth`	Integer; the size of the text field frame.
`title`	Character; the title of the text field frame.

The `front` Method for `textfields` Subclass

Description

The front Method for textfields Subclass

Usage

## S4 method for signature 'textfields'
front(top, initValues, titles, boxwidth = "20")
## S4 method for signature 'textfields'
front(top, initValues, titles, boxwidth = "20")

Arguments

`top`	`tkwin` class object; top of widget window.
`initValues`	List of character; initialization values of text fields.
`titles`	List of character; titles of text fields.
`boxwidth`	Character; size of text fields.

The `front` Method for `toolbox` Subclass

Description

The front Method for toolbox Subclass

Usage

## S4 method for signature 'toolbox'
front(top, 
  showcolourbox = TRUE, 
  fontSize = unlist(options("kmg2FontSize")), 
  fontSize = unlist(options("kmg2FontSize")), 
  fontFamily = unlist(options("kmg2FontFamily")), 
  colourSet = unlist(options("kmg2ColourSet")), 
  saveGraph = unlist(options("kmg2SaveGraph")), 
  themeBase = unlist(options("kmg2Theme"))
)
## S4 method for signature 'toolbox'
front(top, 
  showcolourbox = TRUE, 
  fontSize = unlist(options("kmg2FontSize")), 
  fontSize = unlist(options("kmg2FontSize")), 
  fontFamily = unlist(options("kmg2FontFamily")), 
  colourSet = unlist(options("kmg2ColourSet")), 
  saveGraph = unlist(options("kmg2SaveGraph")), 
  themeBase = unlist(options("kmg2Theme"))
)

Arguments

`top`	`tkwin` class object; top of widget window.
`showcolourbox`	Boolean; whether the colour set frame is shown or not.
`fontSize`	Character; the initialization value of the font size.
`fontFamily`	Numeric; the initialization value of the font family.
`colourSet`	Numeric; the initialization value of the colour set.
`saveGraph`	Numeric; the initialization value of the save graph option.
`themeBase`	Numeric; the initialization value of the theme.

The `front` Method for `variableboxes` Subclass

Description

The front Method for variableboxes Subclass

Usage

## S4 method for signature 'variableboxes'
front(top, types, titles, modes = "default")
## S4 method for signature 'variableboxes'
front(top, types, titles, modes = "default")

Arguments

`top`	`tkwin` class object; top of widget window.
`types`	List of character; types of variableLists.
`titles`	List of character; titles of variable box frame.
`modes`	List of character; select modes.

Box Plot Subclass

Description

gbox class is a subclass for box plots.

Details

This class is a subclass which show dialog boxes of box plots for graphics editing.

Fields

top:: tkwin class object; parent of widget window.
alternateFrame:: tkwin class object; a special frame for some GUI parts.
vbbox1:: variableboxes class object; the frame to select variables.
vbbox2:: variableboxes class object; the frame to select facet variables.
lbbox1:: textfields class object; the frame to set axis labels and the main title.
rbbox1:: radioboxes class object; the frame to set the plot type.
cbbox1:: checkboxes class object; the frame to set options.
tbbox1:: toolbox class object; the frame to set the font, the colour set, other option, and the theme.

Contains

NULL

Methods

plotWindow():: Create the window that make plots.
savePlot(plot):: Save the plot.
registRmlist(object):: Register deletable temporary objects.
removeRmlist():: Remove registered temporary objects.
setFront():: Set front parts of frames.
setBack():: Set back parts of frames.
getWindowTitle():: Get the title of the window.
getHelp():: Get the title of the help document.
getParms():: Get graphics settings parameters.
checkTheme(index):: Check themes.
checkVariable(var):: Check a variable length.
checkError(parms):: Check errors.
setDataframe(parms):: Set data frames.
getGgplot(parms):: Get ggplot.
getGeom(parms):: Get geom.
getScale(parms):: Get scale.
getCoord(parms):: Get coord.
getFacet(parms):: Get facet.
getXlab(parms):: Get xlab.
getYlab(parms):: Get ylab.
getZlab(parms):: Get zlab.
getMain(parms):: Get the main label.
getTheme(parms):: Get theme.
getOpts(parms):: Get other opts.
getPlot(parms):: Get the plot object.
getMessage():: Get the plot error message.
commandDoIt(command):: An wrapper function for command execution.

Contour Plot Subclass

Description

gcont class is a subclass for contour plots.

Details

This class is a subclass which show dialog boxes of contour plots for graphics editing.

Fields

top:: tkwin class object; parent of widget window.
alternateFrame:: tkwin class object; a special frame for some GUI parts.
vbbox1:: variableboxes class object; the frame to select variables.
vbbox2:: variableboxes class object; the frame to select facet variables.
lbbox1:: textfields class object; the frame to set axis labels, the legend label, and the main title.
rbbox1:: radioboxes class object; the frame to set the decoration type.
tbbox1:: toolbox class object; the frame to set the font, the colour set, other option, and the theme.

Contains

NULL

Methods

plotWindow():: Create the window that make plots.
savePlot(plot):: Save the plot.
registRmlist(object):: Register deletable temporary objects.
removeRmlist():: Remove registered temporary objects.
setFront():: Set front parts of frames.
setBack():: Set back parts of frames.
getWindowTitle():: Get the title of the window.
getHelp():: Get the title of the help document.
getParms():: Get graphics settings parameters.
checkTheme(index):: Check themes.
checkVariable(var):: Check a variable length.
checkError(parms):: Check errors.
setDataframe(parms):: Set data frames.
getGgplot(parms):: Get ggplot.
getGeom(parms):: Get geom.
getScale(parms):: Get scale.
getCoord(parms):: Get coord.
getFacet(parms):: Get facet.
getXlab(parms):: Get xlab.
getYlab(parms):: Get ylab.
getZlab(parms):: Get zlab.
getMain(parms):: Get the main label.
getTheme(parms):: Get theme.
getOpts(parms):: Get other opts.
getPlot(parms):: Get the plot object.
getMessage():: Get the plot error message.
commandDoIt(command):: An wrapper function for command execution.

Discrete Bar Charts Subclass

Description

gdiscbar class is a subclass for discrete bar charts.

Details

This class is a subclass which show dialog boxes of discrete bar charts for graphics editing.

Fields

top:: tkwin class object; parent of widget window.
alternateFrame:: tkwin class object; a special frame for some GUI parts.
vbbox1:: variableboxes class object; the frame to select variables.
vbbox2:: variableboxes class object; the frame to select facet variables.
lbbox1:: textfields class object; the frame to set axis labels and the main title.
rbbox1:: radioboxes class object; the frame to set the axis scaling.
tbbox1:: toolbox class object; the frame to set the font, the colour set, other option, and the theme.

Contains

NULL

Methods

plotWindow():: Create the window that make plots.
savePlot(plot):: Save the plot.
registRmlist(object):: Register deletable temporary objects.
removeRmlist():: Remove registered temporary objects.
setFront():: Set front parts of frames.
setBack():: Set back parts of frames.
getWindowTitle():: Get the title of the window.
getHelp():: Get the title of the help document.
getParms():: Get graphics settings parameters.
checkTheme(index):: Check themes.
checkVariable(var):: Check a variable length.
checkError(parms):: Check errors.
setDataframe(parms):: Set data frames.
getGgplot(parms):: Get ggplot.
getGeom(parms):: Get geom.
getScale(parms):: Get scale.
getCoord(parms):: Get coord.
getFacet(parms):: Get facet.
getXlab(parms):: Get xlab.
getYlab(parms):: Get ylab.
getZlab(parms):: Get zlab.
getMain(parms):: Get the main label.
getTheme(parms):: Get theme.
getOpts(parms):: Get other opts.
getPlot(parms):: Get the plot object.
getMessage():: Get the plot error message.
commandDoIt(command):: An wrapper function for command execution.

Distribution Plot Subclass

Description

gdist class is a subclass for distribution plots.

Details

This class is a subclass which show dialog boxes of distribution plots for graphics editing.

Fields

top:: tkwin class object; parent of widget window.
alternateFrame:: tkwin class object; a special frame for some GUI parts.
lbbox1:: textfields class object; the frame to set distribution parameters.
lbbox2:: textfields class object; the frame to set axis labels, the legend label, and the main title.
rbbox1:: radioboxes class object; the frame to set the function type.
tbbox1:: toolbox class object; the frame to set the font, the colour set, other option, and the theme.
windowTitle:: Character; the window title.
distType:: Character; the distribution type ("discrete" or "continuous").
distName:: Character; the distribution name.
parmNames:: List of Characters; names of distribution parameters.
parmInits:: List of Characters; initial values of distribution parameters.

Contains

NULL

Methods

plotWindow():: Create the window that make plots.
savePlot(plot):: Save the plot.
registRmlist(object):: Register deletable temporary objects.
removeRmlist():: Remove registered temporary objects.
setFront():: Set front parts of frames.
setBack():: Set back parts of frames.
getWindowTitle():: Get the title of the window.
getHelp():: Get the title of the help document.
getParms():: Get graphics settings parameters.
checkTheme(index):: Check themes.
checkVariable(var):: Check a variable length.
checkError(parms):: Check errors.
setDataframe(parms):: Set data frames.
getGgplot(parms):: Get ggplot.
getGeom(parms):: Get geom.
getScale(parms):: Get scale.
getCoord(parms):: Get coord.
getFacet(parms):: Get facet.
getXlab(parms):: Get xlab.
getYlab(parms):: Get ylab.
getZlab(parms):: Get zlab.
getMain(parms):: Get the main label.
getTheme(parms):: Get theme.
getOpts(parms):: Get other opts.
getPlot(parms):: Get the plot object.
getMessage():: Get the plot error message.
commandDoIt(command):: An wrapper function for command execution.

Step ribbon plots.

Description

geom_stepribbon is an extension of the geom_ribbon, and is optimized for Kaplan-Meier plots with pointwise confidence intervals or a confidence band.

Usage

geom_stepribbon(
  mapping = NULL,
  data = NULL,
  stat = "identity",
  position = "identity",
  na.rm = FALSE,
  orientation = NA,
  show.legend = NA,
  inherit.aes = TRUE,
  outline.type = "both",
  kmplot = FALSE,
  ...
)
geom_stepribbon(
  mapping = NULL,
  data = NULL,
  stat = "identity",
  position = "identity",
  na.rm = FALSE,
  orientation = NA,
  show.legend = NA,
  inherit.aes = TRUE,
  outline.type = "both",
  kmplot = FALSE,
  ...
)

Arguments

`mapping`	Set of aesthetic mappings created by `aes()`. If specified and inherit.aes = TRUE (the default), it is combined with the default mapping at the top level of the plot. You must supply mapping if there is no plot mapping.
`data`	The data to be displayed in this layer.
`stat`	The statistical transformation to use on the data for this layer.
`position`	A position adjustment to use on the data for this layer.
`na.rm`	If FALSE, the default, missing values are removed with a warning. If TRUE, missing values are silently removed.
`orientation`	The orientation of the layer.
`show.legend`	logical. Should this layer be included in the legends? NA, the default, includes if any aesthetics are mapped. FALSE never includes, and TRUE always includes. It can also be a named logical vector to finely select the aesthetics to display.
`inherit.aes`	If FALSE, overrides the default aesthetics, rather than combining with them. This is most useful for helper functions that define both data and aesthetics and shouldn't inherit behaviour from the default plot specification, e.g. `borders()`.
`outline.type`	Type of the outline of the area; "both" draws both the upper and lower lines, "upper"/"lower" draws the respective lines only. "full" draws a closed polygon around the area.
`kmplot`	If `TRUE`, missing values are replaced by the previous values. This option is needed to make Kaplan-Meier plots if the last observation has event, in which case the upper and lower values of the last observation are missing. This processing is optimized for results from the survfit function.
`...`	Other arguments passed on to layer()'s params argument.

Aesthetics

geom_stepribbon() understands the following aesthetics. Required aesthetics are displayed in bold and defaults are displayed for optional aesthetics:

•	`x` or `y`

•	`ymin` or `xmin`

•	`ymax` or `xmax`

•	`alpha`

•	`colour`

•	`fill`

•	`group`

•	`linetype`

•	`linewidth`

Examples

huron <- data.frame(year = 1875:1972, level = as.vector(LakeHuron))
h <- ggplot(huron, aes(year))
h + geom_stepribbon(aes(ymin = level - 1, ymax = level + 1), fill = "grey70") +
    geom_step(aes(y = level))
h + geom_ribbon(aes(ymin = level - 1, ymax = level + 1), fill = "grey70") +
    geom_line(aes(y = level))
huron <- data.frame(year = 1875:1972, level = as.vector(LakeHuron))
h <- ggplot(huron, aes(year))
h + geom_stepribbon(aes(ymin = level - 1, ymax = level + 1), fill = "grey70") +
    geom_step(aes(y = level))
h + geom_ribbon(aes(ymin = level - 1, ymax = level + 1), fill = "grey70") +
    geom_line(aes(y = level))

Get `coord`

Description

getCoord method gets coord.

Usage

## S4 method for signature 'plot_base'
getCoord(parms)
## S4 method for signature 'plot_base'
getCoord(parms)

Arguments

parms

List of objects; graphics settings parameters.

Value

coord: Character; a code snippet for coords.

Get `facet`

Description

getFacet method gets facet.

Usage

## S4 method for signature 'plot_base'
getFacet(parms)
## S4 method for signature 'plot_base'
getFacet(parms)

Arguments

parms

List of objects; graphics settings parameters.

Value

facet: Character; a code snippet for the facet.

Get `geom`

Description

getGeom method gets geom.

Usage

## S4 method for signature 'plot_base'
getGeom(parms)
## S4 method for signature 'plot_base'
getGeom(parms)

Arguments

parms

List of objects; graphics settings parameters.

Value

geom: Character; a code snippet for geometric objects.

Get `ggplot`

Description

getGgplot method gets ggplot.

Usage

## S4 method for signature 'plot_base'
getGgplot(parms)
## S4 method for signature 'plot_base'
getGgplot(parms)

Arguments

parms

List of objects; graphics settings parameters.

Value

ggplot: Character; a code snippet for ggplot functions.

Get Help

Description

getHelp method gets the title of the help document.

Usage

## S4 method for signature 'plot_base'
getHelp()
## S4 method for signature 'plot_base'
getHelp()

Value

help: Character; the title of the help document.

Get Main Label

Description

getMain method gets the main label (graph title).

Usage

## S4 method for signature 'plot_base'
getMain(parms)
## S4 method for signature 'plot_base'
getMain(parms)

Arguments

parms

List of objects; graphics settings parameters.

Value

main: Character; a code snippet for the main label.

Get Plot Error Message

Description

getMessage method gets the plot error message.

Usage

## S4 method for signature 'plot_base'
getMessage()
## S4 method for signature 'plot_base'
getMessage()

Value

message: Character; the plot error message.

Get Other `opts`

Description

getOpts method gets other graph options.

Usage

## S4 method for signature 'plot_base'
getOpts(parms)
## S4 method for signature 'plot_base'
getOpts(parms)

Arguments

parms

List of objects; graphics settings parameters.

Value

opts: Character; a code snippet for other graph options.

Get Graphics Parameters

Description

getParms method gets graphics settings parameters.

Usage

## S4 method for signature 'plot_base'
getParms()
## S4 method for signature 'plot_base'
getParms()

Value

parms: List of objects; graphics settings parameters.

Get Plot

Description

getPlot method gets the plot object.

Usage

## S4 method for signature 'plot_base'
getPlot(parms)
## S4 method for signature 'plot_base'
getPlot(parms)

Arguments

parms

List of objects; graphics settings parameters.

Value

plot: ggplot2 class object; the plot.

Get `scale`

Description

getScale method gets scale.

Usage

## S4 method for signature 'plot_base'
getScale(parms)
## S4 method for signature 'plot_base'
getScale(parms)

Arguments

parms

List of objects; graphics settings parameters.

Value

scale: Character; a code snippet for scales.

A `gettextRcmdr` Wrapper Function

Description

This function is a gettextRcmdr wrapper function for this package.

Usage

gettextKmg2(...)
gettextKmg2(...)

Arguments

...

arguments passed to gettext function

Get `theme`

Description

getTheme method gets the graph theme.

Usage

## S4 method for signature 'plot_base'
getTheme(parms)
## S4 method for signature 'plot_base'
getTheme(parms)

Arguments

parms

List of objects; graphics settings parameters.

Value

theme: Character; a code snippet for the theme.

Get Title

Description

getWindowTitle method gets the title of the window.

Usage

## S4 method for signature 'plot_base'
getWindowTitle()
## S4 method for signature 'plot_base'
getWindowTitle()

Value

title: Character; the title of the window.

Get `xlab`

Description

getXlab method gets the x-axis label.

Usage

## S4 method for signature 'plot_base'
getXlab(parms)
## S4 method for signature 'plot_base'
getXlab(parms)

Arguments

parms

List of objects; graphics settings parameters.

Value

xlab: Character; a code snippet for the x-axis label.

Get `ylab`

Description

getYlab method gets the y-axis label.

Usage

## S4 method for signature 'plot_base'
getYlab(parms)
## S4 method for signature 'plot_base'
getYlab(parms)

Arguments

parms

List of objects; graphics settings parameters.

Value

ylab: Character; a code snippet for the y-axis label.

Get `zlab`

Description

getZlab method gets the label of the stratum.

Usage

## S4 method for signature 'plot_base'
getZlab(parms)
## S4 method for signature 'plot_base'
getZlab(parms)

Arguments

parms

List of objects; graphics settings parameters.

Value

zlab: Character; a code snippet for the label of the stratum.

A Modified Function of `ggsave` for `recordedplot` Class Objects

Description

This is a modified function of ggsave for recordedplot class objects.

Usage

ggsaveKmg2(
  filename = default_name(plot),
  plot = last_plot(),
  device = default_device(filename),
  path = NULL,
  scale = 1,
  width = par("din")[1],
  height = par("din")[2],
  units = c("in", "cm", "mm"),
  dpi = 300,
  ...
)
ggsaveKmg2(
  filename = default_name(plot),
  plot = last_plot(),
  device = default_device(filename),
  path = NULL,
  scale = 1,
  width = par("din")[1],
  height = par("din")[2],
  units = c("in", "cm", "mm"),
  dpi = 300,
  ...
)

Arguments

`filename`	file name/filename of plot
`plot`	plot to save, defaults to last plot displayed
`device`	device to use, automatically extract from file name extension
`path`	path to save plot to (if you just want to set path and not filename)
`scale`	scaling factor
`width`	width (defaults to the width of current plotting window)
`height`	height (defaults to the height of current plotting window)
`units`	units for width and height when either one is explicitly specified (in, cm, or mm)
`dpi`	dpi to use for raster graphics
`...`	other arguments passed to graphics device

Histogram Subclass

Description

ghist class is a subclass for histograms.

Details

This class is a subclass which show dialog boxes of histograms for graphics editing.

Fields

top:: tkwin class object; parent of widget window.
alternateFrame:: tkwin class object; a special frame for some GUI parts.
vbbox1:: variableboxes class object; the frame to select variables.
vbbox2:: variableboxes class object; the frame to select facet variables.
vbbox3:: variableboxes class object; the frame to set the no. of bins.
lbbox1:: textfields class object; the frame to set axis labels and the main title.
rbbox1:: radioboxes class object; the frame to set the axis scaling.
cbbox1:: checkboxes class object; the frame to set options.
tbbox1:: toolbox class object; the frame to set the font, the colour set, other option, and the theme.

Contains

NULL

Methods

plotWindow():: Create the window that make plots.
savePlot(plot):: Save the plot.
registRmlist(object):: Register deletable temporary objects.
removeRmlist():: Remove registered temporary objects.
setFront():: Set front parts of frames.
setBack():: Set back parts of frames.
getWindowTitle():: Get the title of the window.
getHelp():: Get the title of the help document.
getParms():: Get graphics settings parameters.
checkTheme(index):: Check themes.
checkVariable(var):: Check a variable length.
checkError(parms):: Check errors.
setDataframe(parms):: Set data frames.
getGgplot(parms):: Get ggplot.
getGeom(parms):: Get geom.
getScale(parms):: Get scale.
getCoord(parms):: Get coord.
getFacet(parms):: Get facet.
getXlab(parms):: Get xlab.
getYlab(parms):: Get ylab.
getZlab(parms):: Get zlab.
getMain(parms):: Get the main label.
getTheme(parms):: Get theme.
getOpts(parms):: Get other opts.
getPlot(parms):: Get the plot object.
getMessage():: Get the plot error message.
commandDoIt(command):: An wrapper function for command execution.

Kaplan-Meier Plot Subclass

Description

gkm class is a subclass for Kaplan-Meier plots.

Details

This class is a subclass which show dialog boxes of Kaplan-Meier plots for graphics editing.

Fields

top:: tkwin class object; parent of widget window.
alternateFrame:: tkwin class object; a special frame for some GUI parts.
vbbox1:: variableboxes class object; the frame to select variables.
vbbox2:: variableboxes class object; the frame to select facet variables.
lbbox1:: textfields class object; the frame to set axis labels, the legend label, and the main title.
lbbox2:: textfields class object; the frame to set the tick count.
rbbox1:: radioboxes class object; the frame to set the plot type.
cbbox1:: checkboxes class object; the frame to set option(s).
tbbox1:: toolbox class object; the frame to set the font, the colour set, other option, and the theme.

Contains

NULL

Methods

plotWindow():: Create the window that make plots.
savePlot(plot):: Save the plot.
registRmlist(object):: Register deletable temporary objects.
removeRmlist():: Remove registered temporary objects.
setFront():: Set front parts of frames.
setBack():: Set back parts of frames.
getWindowTitle():: Get the title of the window.
getHelp():: Get the title of the help document.
getParms():: Get graphics settings parameters.
checkTheme(index):: Check themes.
checkVariable(var):: Check a variable length.
checkError(parms):: Check errors.
setDataframe(parms):: Set data frames.
getGgplot(parms):: Get ggplot.
getGeom(parms):: Get geom.
getScale(parms):: Get scale.
getCoord(parms):: Get coord.
getFacet(parms):: Get facet.
getXlab(parms):: Get xlab.
getYlab(parms):: Get ylab.
getZlab(parms):: Get zlab.
getMain(parms):: Get the main label.
getTheme(parms):: Get theme.
getOpts(parms):: Get other opts.
getPlot(parms):: Get the plot object.
getMessage():: Get the plot error message.
commandDoIt(command):: An wrapper function for command execution.

Line Chart Subclass

Description

gline class is a subclass for line charts.

Details

This class is a subclass which show dialog boxes of line charts for graphics editing.

Fields

top:: tkwin class object; parent of widget window.
alternateFrame:: tkwin class object; a special frame for some GUI parts.
vbbox1:: variableboxes class object; the frame to select variables.
vbbox2:: variableboxes class object; the frame to select facet variables.
lbbox1:: textfields class object; the frame to set axis labels, the legend label, and the main title.
rbbox1:: radioboxes class object; the frame to set the plot type.
rbbox2:: radioboxes class object; the frame to set the summary type.
rbbox3:: radioboxes class object; the frame to set the scale type.
tbbox1:: toolbox class object; the frame to set the font, the colour set, other option, and the theme.

Contains

NULL

Methods

plotWindow():: Create the window that make plots.
savePlot(plot):: Save the plot.
registRmlist(object):: Register deletable temporary objects.
removeRmlist():: Remove registered temporary objects.
setFront():: Set front parts of frames.
setBack():: Set back parts of frames.
getWindowTitle():: Get the title of the window.
getHelp():: Get the title of the help document.
getParms():: Get graphics settings parameters.
checkTheme(index):: Check themes.
checkVariable(var):: Check a variable length.
checkError(parms):: Check errors.
setDataframe(parms):: Set data frames.
getGgplot(parms):: Get ggplot.
getGeom(parms):: Get geom.
getScale(parms):: Get scale.
getCoord(parms):: Get coord.
getFacet(parms):: Get facet.
getXlab(parms):: Get xlab.
getYlab(parms):: Get ylab.
getZlab(parms):: Get zlab.
getMain(parms):: Get the main label.
getTheme(parms):: Get theme.
getOpts(parms):: Get other opts.
getPlot(parms):: Get the plot object.
getMessage():: Get the plot error message.
commandDoIt(command):: An wrapper function for command execution.

Base Class for GUI Frames

Description

gparts_base class is the base class for GUI frames.

Details

This class is a framework for implementing subclasses which make GUI frames.

Fields

frame:: tkwin class object; parent of widget window.
length:: Integer; number of grids.
back_list:: List of tkwin class object; list of grids.

Contains

NULL

Methods

back(perline = 3):: back method for gparts_base class.

Pie Charts Subclass

Description

gpie class is a subclass for pie charts.

Details

This class is a subclass which show dialog boxes of pie charts for graphics editing.

Fields

top:: tkwin class object; parent of widget window.
alternateFrame:: tkwin class object; a special frame for some GUI parts.
vbbox1:: variableboxes class object; the frame to select variables.
vbbox2:: variableboxes class object; the frame to select facet variables.
lbbox1:: textfields class object; the frame to set axis labels and the main title.
tbbox1:: toolbox class object; the frame to set the font, the colour set, other option, and the theme.

Contains

NULL

Methods

plotWindow():: Create the window that make plots.
savePlot(plot):: Save the plot.
registRmlist(object):: Register deletable temporary objects.
removeRmlist():: Remove registered temporary objects.
setFront():: Set front parts of frames.
setBack():: Set back parts of frames.
getWindowTitle():: Get the title of the window.
getHelp():: Get the title of the help document.
getParms():: Get graphics settings parameters.
checkTheme(index):: Check themes.
checkVariable(var):: Check a variable length.
checkError(parms):: Check errors.
setDataframe(parms):: Set data frames.
getGgplot(parms):: Get ggplot.
getGeom(parms):: Get geom.
getScale(parms):: Get scale.
getCoord(parms):: Get coord.
getFacet(parms):: Get facet.
getXlab(parms):: Get xlab.
getYlab(parms):: Get ylab.
getZlab(parms):: Get zlab.
getMain(parms):: Get the main label.
getTheme(parms):: Get theme.
getOpts(parms):: Get other opts.
getPlot(parms):: Get the plot object.
getMessage():: Get the plot error message.
commandDoIt(command):: An wrapper function for command execution.

Q-Q Plot Subclass

Description

gqq class is a subclass for Q-Q plots.

Details

This class is a subclass which show dialog boxes of Q-Q plots for graphics editing.

Fields

top:: tkwin class object; parent of widget window.
alternateFrame:: tkwin class object; a special frame for some GUI parts.
vbbox1:: variableboxes class object; the frame to select variables.
lbbox1:: textfields class object; the frame to set axis labels, the legend label, and the main title.
lbbox2:: textfields class object; the frame to set other theoretical distribution.
rbbox1:: radioboxes class object; the frame to set the theoretical distribution.
tbbox1:: toolbox class object; the frame to set the font, the colour set, other option, and the theme.

Contains

NULL

Methods

plotWindow():: Create the window that make plots.
savePlot(plot):: Save the plot.
registRmlist(object):: Register deletable temporary objects.
removeRmlist():: Remove registered temporary objects.
setFront():: Set front parts of frames.
setBack():: Set back parts of frames.
getWindowTitle():: Get the title of the window.
getHelp():: Get the title of the help document.
getParms():: Get graphics settings parameters.
checkTheme(index):: Check themes.
checkVariable(var):: Check a variable length.
checkError(parms):: Check errors.
setDataframe(parms):: Set data frames.
getGgplot(parms):: Get ggplot.
getGeom(parms):: Get geom.
getScale(parms):: Get scale.
getCoord(parms):: Get coord.
getFacet(parms):: Get facet.
getXlab(parms):: Get xlab.
getYlab(parms):: Get ylab.
getZlab(parms):: Get zlab.
getMain(parms):: Get the main label.
getTheme(parms):: Get theme.
getOpts(parms):: Get other opts.
getPlot(parms):: Get the plot object.
getMessage():: Get the plot error message.
commandDoIt(command):: An wrapper function for command execution.

Scatter Plot Subclass

Description

gscat class is a subclass for scatter plots.

Details

This class is a subclass which show dialog boxes of scatter plots for graphics editing.

Fields

top:: tkwin class object; parent of widget window.
alternateFrame:: tkwin class object; a special frame for some GUI parts.
vbbox1:: variableboxes class object; the frame to select variables.
vbbox2:: variableboxes class object; the frame to select facet variables.
lbbox1:: textfields class object; the frame to set axis labels, the legend label, and the main title.
rbbox1:: radioboxes class object; the frame to set the smoothing type.
tbbox1:: toolbox class object; the frame to set the font, the colour set, other option, and the theme.

Contains

NULL

Methods

plotWindow():: Create the window that make plots.
savePlot(plot):: Save the plot.
registRmlist(object):: Register deletable temporary objects.
removeRmlist():: Remove registered temporary objects.
setFront():: Set front parts of frames.
setBack():: Set back parts of frames.
getWindowTitle():: Get the title of the window.
getHelp():: Get the title of the help document.
getParms():: Get graphics settings parameters.
checkTheme(index):: Check themes.
checkVariable(var):: Check a variable length.
checkError(parms):: Check errors.
setDataframe(parms):: Set data frames.
getGgplot(parms):: Get ggplot.
getGeom(parms):: Get geom.
getScale(parms):: Get scale.
getCoord(parms):: Get coord.
getFacet(parms):: Get facet.
getXlab(parms):: Get xlab.
getYlab(parms):: Get ylab.
getZlab(parms):: Get zlab.
getMain(parms):: Get the main label.
getTheme(parms):: Get theme.
getOpts(parms):: Get other opts.
getPlot(parms):: Get the plot object.
getMessage():: Get the plot error message.
commandDoIt(command):: An wrapper function for command execution.

Scatter Plot Matrix Subclass

Description

gscatmat class is a subclass for a scatter plot matrix.

Details

This class is a subclass which show dialog boxes of a scatter plot matrix for graphics editing.

Fields

top:: tkwin class object; parent of widget window.
alternateFrame:: tkwin class object; a special frame for some GUI parts.
vbbox1:: variableboxes class object; the frame to select variables.
lbbox1:: textfields class object; the frame to set the main title.
rbbox1:: radioboxes class object; the frame to set the smoothing type.
tbbox1:: toolbox class object; the frame to set the font, the colour set, other option, and the theme.

Contains

NULL

Methods

plotWindow():: Create the window that make plots.
savePlot(plot):: Save the plot.
registRmlist(object):: Register deletable temporary objects.
removeRmlist():: Remove registered temporary objects.
setFront():: Set front parts of frames.
setBack():: Set back parts of frames.
getWindowTitle():: Get the title of the window.
getHelp():: Get the title of the help document.
getParms():: Get graphics settings parameters.
checkTheme(index):: Check themes.
checkVariable(var):: Check a variable length.
checkError(parms):: Check errors.
setDataframe(parms):: Set data frames.
getGgplot(parms):: Get ggplot.
getGeom(parms):: Get geom.
getScale(parms):: Get scale.
getCoord(parms):: Get coord.
getFacet(parms):: Get facet.
getXlab(parms):: Get xlab.
getYlab(parms):: Get ylab.
getZlab(parms):: Get zlab.
getMain(parms):: Get the main label.
getTheme(parms):: Get theme.
getOpts(parms):: Get other opts.
getPlot(parms):: Get the plot object.
getMessage():: Get the plot error message.
commandDoIt(command):: An wrapper function for command execution.

Listing the last command

Description

This function lists the last command is executed by RcmdrPlugin.KMggplot2

Usage

lastcom()
lastcom()

Select Non Factor Variables

Description

This is a function to select non-factor variables for the Rcmdr package.

Usage

nonFactors()
nonFactors()

Check Non Factor Variables in The Active Dataset

Description

This is a function to check the active dataset has more than or equal to n non-factor variables.

Usage

nonFactorsP(n = 1)
nonFactorsP(n = 1)

Arguments

`n`	Numeric: the target number of `n`.

Value

result: Boolean; the active dataset has or does not have more than or equal to n non-factor variables.

Base Class for Plot Windows

Description

plot_base class is the base class for plot windows.

Details

This class is a framework for implementing subclasses which show dialog boxes for graphics editing.

Fields

top:: tkwin class object; parent of widget window.
alternateFrame:: tkwin class object; a special frame for some GUI parts.
rmlist:: List of character; deletable temporary objects.
mode:: numeric; the executive mode (0 = justDoIt, 1 = doItAndPrint).

Contains

NULL

Methods

plotWindow():: Create the window that make plots.
savePlot(plot):: Save the plot.
registRmlist(object):: Register deletable temporary objects.
removeRmlist():: Remove registered temporary objects.
setFront():: Set front parts of frames.
setBack():: Set back parts of frames.
getWindowTitle():: Get the title of the window.
getHelp():: Get the title of the help document.
getParms():: Get graphics settings parameters.
checkTheme(index):: Check themes.
checkVariable(var):: Check a variable length.
checkError(parms):: Check errors.
setDataframe(parms):: Set data frames.
getGgplot(parms):: Get ggplot.
getGeom(parms):: Get geom.
getScale(parms):: Get scale.
getCoord(parms):: Get coord.
getFacet(parms):: Get facet.
getXlab(parms):: Get xlab.
getYlab(parms):: Get ylab.
getZlab(parms):: Get zlab.
getMain(parms):: Get the main label.
getTheme(parms):: Get theme.
getOpts(parms):: Get other opts.
getPlot(parms):: Get the plot object.
getMessage():: Get the plot error message.
commandDoIt(command):: An wrapper function for command execution.

Create Plot Window

Description

plotWindow method creates the window that make plots.

Usage

## S4 method for signature 'plot_base'
plotWindow()
## S4 method for signature 'plot_base'
plotWindow()

Radio Boxes Subclass

Description

radioboxes class is a subclass for GUI radio box frame.

Details

This class is a subclass which make GUI radio box frame.

Fields

frame:: tkwin class object; parent of widget window.
length:: Integer; number of grids.
back_list:: List of tkwin class object; list of grids.
value:: tclVar class object; the value of the radio box frame.
rbradioboxes:: tkwin class object; the radio box frame.

Contains

gparts_base

Methods

back(perline = 3):: back method for gparts_base class.
front(top, labels, title = "", initValue = 1, right.buttons = FALSE):: front method for radioboxes subclass.

Register Deletable Temporary Objects

Description

registRmlist method registers deletable temporary objects.

Usage

## S4 method for signature 'plot_base'
registRmlist(object)
## S4 method for signature 'plot_base'
registRmlist(object)

Arguments

object

Object; the deletable temporary object to register.

Remove Registered Temporary Objects

Description

removeRmlist method removes registered temporary objects.

Usage

## S4 method for signature 'plot_base'
removeRmlist()
## S4 method for signature 'plot_base'
removeRmlist()

Save Plot

Description

savePlot method saves the plot.

Usage

## S4 method for signature 'plot_base'
savePlot(plot, useGgsave)
## S4 method for signature 'plot_base'
savePlot(plot, useGgsave)

Arguments

`plot`	`ggplot` or `recordedplot` class object; the plot to save.
`useGgsave`	Boolean; use `ggsave`.

Set Back Parts

Description

setBack method sets back parts of frames.

Usage

## S4 method for signature 'plot_base'
setBack()
## S4 method for signature 'plot_base'
setBack()

Set Data Frames

Description

setDataframe method sets data frames.

Usage

## S4 method for signature 'plot_base'
setDataframe(parms)
## S4 method for signature 'plot_base'
setDataframe(parms)

Arguments

parms

List of objects; graphics settings parameters.

Set Front Parts

Description

setFront method sets front parts of frames.

Usage

## S4 method for signature 'plot_base'
setFront()
## S4 method for signature 'plot_base'
setFront()

Text Field Subclass

Description

textfield class is a subclass for GUI text field frame.

Details

This class is a subclass which make GUI text field frame.

Fields

frame:: tkwin class object; parent of widget window.
length:: Integer; number of grids.
back_list:: List of tkwin class object; list of grids.
value:: tclVar class object; the value of the text field frame.

Contains

gparts_base

Methods

back(perline = 3):: back method for gparts_base class.
front(top, initialValue, boxwidth, title):: front method for textfield subclass.

Multiple Text Fields Subclass

Description

textfields class is a subclass for GUI multiple text fileds frame.

Details

This class is a subclass which make GUI multiple text fileds frame.

Fields

frame:: tkwin class object; parent of widget window.
length:: Integer; number of grids.
back_list:: List of tkwin class object; list of grids.
fields:: List of textfield class object; list of textfield.

Contains

gparts_base

Methods

back(perline = 3):: back method for gparts_base class.
front(top, initValues, titles, boxwidth = "20"):: front method for textfields subclass.

A Theme for No of At Risk in Kaplan-Meier Plots

Description

These functions generate graphics themes for no of at risk in Kaplan-Meier Plots.

Usage

theme_natrisk(base_theme, base_size = 20, base_family = "")
theme_natrisk(base_theme, base_size = 20, base_family = "")

Arguments

`base_theme`	base theme name
`base_size`	base font size
`base_family`	font family name

A Theme for No of At Risk in Kaplan-Meier Plots

Description

These functions generate graphics themes for no of at risk in Kaplan-Meier Plots.

Usage

theme_natrisk21(base_theme, base_size = 20, base_family = "")
theme_natrisk21(base_theme, base_size = 20, base_family = "")

Arguments

`base_theme`	base theme name
`base_size`	base font size
`base_family`	font family name

A Theme for No of At Risk in Kaplan-Meier Plots

Description

These functions generate graphics themes for no of at risk in Kaplan-Meier Plots.

Usage

theme_natriskbg(base_theme, base_size = 20, base_family = "")
theme_natriskbg(base_theme, base_size = 20, base_family = "")

Arguments

`base_theme`	base theme name
`base_size`	base font size
`base_family`	font family name

A Simple Black and White Theme

Description

A Simple Black and White Theme

Usage

theme_simple(base_size = 16, base_family = "")
theme_simple(base_size = 16, base_family = "")

Arguments

`base_size`	base font size
`base_family`	font family name

A Wrapper Theme for ggthemes's theme_wsj

Description

A Wrapper Theme for ggthemes's theme_wsj

Usage

theme_wsj2(base_size = 16, base_family = "")
theme_wsj2(base_size = 16, base_family = "")

Arguments

`base_size`	base font size
`base_family`	font family name

Tool Box Subclass

Description

toolbox class is a subclass for GUI tool box frame.

Details

This class is a subclass which make GUI tool box frame.

Fields

frame:: tkwin class object; parent of widget window.
length:: Integer; number of grids.
back_list:: List of tkwin class object; list of grids.
size:: textfield class object; the value of the font size frame.
family:: listbox class object; the value of the font family frame.
colour:: listbox class object; the value of the colour set frame.
goption:: checkboxes class object; values of other options frame.
theme:: radioboxes class object; the value of the graph theme frame.

Contains

gparts_base

Methods

back(perline = 3):: back method for gparts_base class.
front(top, showcolourbox = TRUE, fontSize = unlist(options("kmg2FontSize")), fontSize = unlist(options("kmg2FontSize")), fontFamily = unlist(options("kmg2FontFamily")), colourSet = unlist(options("kmg2ColourSet")), saveGraph = unlist(options("kmg2SaveGraph")), themeBase = unlist(options("kmg2Theme")) ):: front method for toolbox subclass.

Variable Boxes Subclass

Description

variableboxes class is a subclass for GUI variable box frame.

Details

This class is a subclass which make GUI variable box frame.

Fields

frame:: tkwin class object; parent of widget window.
length:: Integer; number of grids.
back_list:: List of tkwin class object; list of grids.
variable:: List of listbox class object; variables of the variable box frame.

Contains

gparts_base

Methods

back(perline = 3):: back method for gparts_base class.
front(top, types, titles, modes = "default"):: front method for variableboxes subclass.

Wrapper Function of Box Plot Subclass

Description

windowBox function is a wrapper function of gbox class for the R-commander menu bar.

Usage

windowBox()
windowBox()

Wrapper Function of Contour Plot Subclass

Description

windowContour function is a wrapper function of gcont class for the R-commander menu bar.

Usage

windowContour()
windowContour()

Wrapper Function of Discrete Bar Charts Subclass

Description

windowDiscretebar function is a wrapper function of gdiscbar class for the R-commander menu bar.

Usage

windowDiscretebar()
windowDiscretebar()

Wrapper Function of Beta Distribution Plot Subclass

Description

windowDistBeta function is a wrapper function of gdist class for the R-commander menu bar.

Usage

windowDistBeta()
windowDistBeta()

Wrapper Function of Binomial Distribution Plot Subclass

Description

windowDistBinom function is a wrapper function of gdist class for the R-commander menu bar.

Usage

windowDistBinom()
windowDistBinom()

Wrapper Function of Cauchy Distribution Plot Subclass

Description

windowDistCauchy function is a wrapper function of gdist class for the R-commander menu bar.

Usage

windowDistCauchy()
windowDistCauchy()

Wrapper Function of Chi-square Distribution Plot Subclass

Description

windowDistChisq function is a wrapper function of gdist class for the R-commander menu bar.

Usage

windowDistChisq()
windowDistChisq()

Wrapper Function of Exponential Distribution Plot Subclass

Description

windowDistExp function is a wrapper function of gdist class for the R-commander menu bar.

Usage

windowDistExp()
windowDistExp()

Wrapper Function of F Distribution Plot Subclass

Description

windowDistF function is a wrapper function of gdist class for the R-commander menu bar.

Usage

windowDistF()
windowDistF()

Wrapper Function of Gamma Distribution Plot Subclass

Description

windowDistGamma function is a wrapper function of gdist class for the R-commander menu bar.

Usage

windowDistGamma()
windowDistGamma()

Wrapper Function of Geometric Distribution Plot Subclass

Description

windowDistGeom function is a wrapper function of gdist class for the R-commander menu bar.

Usage

windowDistGeom()
windowDistGeom()

Wrapper Function of Hypergeometric Distribution Plot Subclass

Description

windowDistHyper function is a wrapper function of gdist class for the R-commander menu bar.

Usage

windowDistHyper()
windowDistHyper()

Wrapper Function of Log-normal Distribution Plot Subclass

Description

windowDistLnorm function is a wrapper function of gdist class for the R-commander menu bar.

Usage

windowDistLnorm()
windowDistLnorm()

Wrapper Function of Logistic Distribution Plot Subclass

Description

windowDistLogis function is a wrapper function of gdist class for the R-commander menu bar.

Usage

windowDistLogis()
windowDistLogis()

Wrapper Function of Negative Binomial Distribution Plot Subclass

Description

windowDistNbinom function is a wrapper function of gdist class for the R-commander menu bar.

Usage

windowDistNbinom()
windowDistNbinom()

Wrapper Function of Normal Distribution Plot Subclass

Description

windowDistNorm function is a wrapper function of gdist class for the R-commander menu bar.

Usage

windowDistNorm()
windowDistNorm()

Wrapper Function of Poisson Distribution Plot Subclass

Description

windowDistPois function is a wrapper function of gdist class for the R-commander menu bar.

Usage

windowDistPois()
windowDistPois()

Wrapper Function of t Distribution Plot Subclass

Description

windowDistT function is a wrapper function of gdist class for the R-commander menu bar.

Usage

windowDistT()
windowDistT()

Wrapper Function of Uniform Distribution Plot Subclass

Description

windowDistUnif function is a wrapper function of gdist class for the R-commander menu bar.

Usage

windowDistUnif()
windowDistUnif()

Wrapper Function of Weibull Distribution Plot Subclass

Description

windowDistWeibull function is a wrapper function of gdist class for the R-commander menu bar.

Usage

windowDistWeibull()
windowDistWeibull()

Wrapper Function of Factorize Subclass

Description

windowFactorize function is a wrapper function of factorize class for the R-commander menu bar.

Usage

windowFactorize()
windowFactorize()

Wrapper Function of Histogram Subclass

Description

windowHist function is a wrapper function of ghist class for the R-commander menu bar.

Usage

windowHist()
windowHist()

Wrapper Function of Kaplan-Meier Plot Subclass

Description

windowKM function is a wrapper function of gkm class for the R-commander menu bar.

Usage

windowKM()
windowKM()

Wrapper Function of Line Chart Subclass

Description

windowScatter function is a wrapper function of gline class for the R-commander menu bar.

Usage

windowLine()
windowLine()

Wrapper Function of Pie Charts Subclass

Description

windowPie function is a wrapper function of gpie class for the R-commander menu bar.

Usage

windowPie()
windowPie()

Wrapper Function of Q-Q Plot Subclass

Description

windowQQ function is a wrapper function of gqq class for the R-commander menu bar.

Usage

windowQQ()
windowQQ()

Wrapper Function of Scatter Plot Subclass

Description

windowScatter function is a wrapper function of gscat class for the R-commander menu bar.

Usage

windowScatter()
windowScatter()

Wrapper Function of Scatter Plot Matrix Subclass

Description

windowScattermat function is a wrapper function of gscatmat class for the R-commander menu bar.

Usage

windowScattermat()
windowScattermat()

Package 'RcmdrPlugin.KMggplot2'

Help Index

R Commander Plug-in for Data Visualization with 'ggplot2'

Description

Author(s)

See Also

The back Method for gparts_base Class

Description

Usage

Arguments

See Also

Check Boxes Subclass

Description

Details

Fields

Contains

Methods

See Also

Check Errors

Description

Usage

Arguments

Value

See Also

Check Themes

Description

Usage

Arguments

Value

See Also

Check Variable Length

Description

Usage

Arguments

Value

See Also

An Wrapper Function for Command Execution

Description

Usage

Arguments

See Also

A Dummy Data for Contour Plots

Description

Format

See Also

Examples

A Dummy Data for Survival Analysis

Description

Format

See Also

Examples

A Dummy Data for Line Charts

Description

Format

See Also

Examples

Factorize Subclass

Description

Details

Fields

Contains

Methods

See Also

The front Method for checkboxes Subclass

Description

Usage

Arguments

See Also

The front Method for radioboxes Subclass

Description

Usage

Arguments

See Also

The front Method for textfield Subclass

Description

Usage

Arguments

See Also

The front Method for textfields Subclass

Description

The `back` Method for `gparts_base` Class

The `front` Method for `checkboxes` Subclass

The `front` Method for `radioboxes` Subclass

The `front` Method for `textfield` Subclass

The `front` Method for `textfields` Subclass

The `front` Method for `toolbox` Subclass

The `front` Method for `variableboxes` Subclass

Get `coord`

Get `facet`

Get `geom`

Get `ggplot`